柱花草的nbs類抗病基因類似物的分離及分析.doc
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柱花草的nbs類抗病基因類似物的分離及分析,本文共10頁,1.3萬余字摘 要:利用已知的植物r基因nbs序列中保守區(qū)域設(shè)計(jì)簡并引物, 以熱研2號(hào)柱花草(stylosanthes guianensis cv.reyan no 2)基因組dna為模板進(jìn)行 pcr擴(kuò)增,獲得500 bp的pcr產(chǎn)物,通過克隆、測序和序列比得到了3條 rgas,分別命名為 sg1,sg2...
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本文共10頁,1.3萬余字
摘 要:利用已知的植物R基因NBS序列中保守區(qū)域設(shè)計(jì)簡并引物, 以熱研2號(hào)柱花草(Stylosanthes guianensis cv.Reyan No 2)基因組DNA為模板進(jìn)行 PCR擴(kuò)增,獲得500 bp的PCR產(chǎn)物,通過克隆、測序和序列比得到了3條 RGAs,分別命名為 SG1, SG2和 SG3,它們?nèi)烤哂羞B續(xù)的 ORF。利用柱花草的3條 RGAs在GenBank上進(jìn)行相似性搜索,同源性比較分析表明,它們與已克隆的抗病基因或抗病基因片段有不同程度的同源性。對(duì)它們的推斷的氨基酸序列進(jìn)行結(jié)構(gòu)分析表明,它們包括了“P-loop”、“Kinase-2”、“kinase-3”、“GLPL”4個(gè)抗病基因所共有的保守模體。進(jìn)行系統(tǒng)發(fā)育樹分析表明, 這3個(gè)RGAs分為 TIR (Drosophila Toll or human interleukin receptor-like) 和 non-TIR兩類, 與前人所報(bào)道的R 基因進(jìn)化一致。說明柱花草NBS類RGAs可能和其他物種具有同樣的起源和進(jìn)化機(jī)制。
關(guān)鍵詞:柱花草 NBS RGAs 序列分析
Isolation and Analysis of the NBS Class Resistance Gene Analogs from Stylosanthes spp
Abstract: Degenerate oligonucleotide primers based on conserved motifs in the nucleotide binding site (NBS) region of known resistance proteins were used to amplify sequences from genomic DNA of Stylosanthes guianensis cv.Reyan No.2. Amplified products of about 500 bp were cloned and sequenced. Three resistant gene analogs with opening reading frame were obtained, named as SG1, SG2 and SG3 respectively. Searching in the GenBank database using BLAST revealed that three classes of sequences showed high level of amino acid similarity to several cloned NBS class resistance genes and many RGAs known from other plant species. Analysis of the amino acid sequences deduced from the three sequenced RGAs, four motifs of NBS conserved regions exist in the three sequenced RGAs, which including P-loop GGVGKTT, kinase-2VLDD, kinase-3 GSRII and membrane spanning region GLPL. Three resistant gene analogs were divided to TIR and non-TIR by analysing phylogenetic tree, and which consistent with the evolutin mechanism of R gene reported by predecessor. NBS class resistance gene analogs from Stylosanthes were probably similar to origin and evolution of other species resistance gene.
Keyword: Stylosanthes guianensis; NBS; RGAs; sequence analysis
1 前言
植物在生長過程中常會(huì)受到病原微生物的侵襲,為了抵御外來微生物的危害,植物在長期的進(jìn)化過程中,形成了一系列復(fù)雜的抗病防御機(jī)制,如:由于植物先天性結(jié)構(gòu)屏障和固有的毒性化合物的存在而表現(xiàn)的非寄主抗性,以及植物由于抗病基因(Resistance gene,R)的存在而表現(xiàn)出的局部或系統(tǒng)抗性[1]。因此, 克隆與分析植物抗病基因,對(duì)闡明植物抗病性的分子機(jī)制及改良作物抗病性具有重要的意義。
參考文獻(xiàn):
[1] 陳觀水, 周以飛, 林生, 等. 甘薯NBS類抗病基因類似物的分離與序列分析[J]. 熱帶亞熱帶植物學(xué)報(bào), 2006, 14(5): 359-365.
[2] Kanazin V, Marek L F, Shoemaker R C. Resistance gene analogs are conserved and clustered in soybean [J]. Proc Natl Acad Sci USA, 1996, 93(21): 11746-11750.
[3] Yu Y G, Buss G R, Saghai M M A. Isolation of a superfamily of candidate disease-resistance genes in soybean based on a conserved nucleotide-binding site[J]. Proc Natl Acad Sci USA, 1996, 93(21): 11751-11756.
[4] 付海天, 趙英, 蔣昌順. 柱花草炭疽病研究進(jìn)展[J]. 中國農(nóng)學(xué)通報(bào), 2006, 22(2): 382-385.
[5] 蔣昌順. 我國對(duì)柱花草屬不同種的研究與利用[J]. 熱帶農(nóng)業(yè)科學(xué), 1995(3): 64-70.
摘 要:利用已知的植物R基因NBS序列中保守區(qū)域設(shè)計(jì)簡并引物, 以熱研2號(hào)柱花草(Stylosanthes guianensis cv.Reyan No 2)基因組DNA為模板進(jìn)行 PCR擴(kuò)增,獲得500 bp的PCR產(chǎn)物,通過克隆、測序和序列比得到了3條 RGAs,分別命名為 SG1, SG2和 SG3,它們?nèi)烤哂羞B續(xù)的 ORF。利用柱花草的3條 RGAs在GenBank上進(jìn)行相似性搜索,同源性比較分析表明,它們與已克隆的抗病基因或抗病基因片段有不同程度的同源性。對(duì)它們的推斷的氨基酸序列進(jìn)行結(jié)構(gòu)分析表明,它們包括了“P-loop”、“Kinase-2”、“kinase-3”、“GLPL”4個(gè)抗病基因所共有的保守模體。進(jìn)行系統(tǒng)發(fā)育樹分析表明, 這3個(gè)RGAs分為 TIR (Drosophila Toll or human interleukin receptor-like) 和 non-TIR兩類, 與前人所報(bào)道的R 基因進(jìn)化一致。說明柱花草NBS類RGAs可能和其他物種具有同樣的起源和進(jìn)化機(jī)制。
關(guān)鍵詞:柱花草 NBS RGAs 序列分析
Isolation and Analysis of the NBS Class Resistance Gene Analogs from Stylosanthes spp
Abstract: Degenerate oligonucleotide primers based on conserved motifs in the nucleotide binding site (NBS) region of known resistance proteins were used to amplify sequences from genomic DNA of Stylosanthes guianensis cv.Reyan No.2. Amplified products of about 500 bp were cloned and sequenced. Three resistant gene analogs with opening reading frame were obtained, named as SG1, SG2 and SG3 respectively. Searching in the GenBank database using BLAST revealed that three classes of sequences showed high level of amino acid similarity to several cloned NBS class resistance genes and many RGAs known from other plant species. Analysis of the amino acid sequences deduced from the three sequenced RGAs, four motifs of NBS conserved regions exist in the three sequenced RGAs, which including P-loop GGVGKTT, kinase-2VLDD, kinase-3 GSRII and membrane spanning region GLPL. Three resistant gene analogs were divided to TIR and non-TIR by analysing phylogenetic tree, and which consistent with the evolutin mechanism of R gene reported by predecessor. NBS class resistance gene analogs from Stylosanthes were probably similar to origin and evolution of other species resistance gene.
Keyword: Stylosanthes guianensis; NBS; RGAs; sequence analysis
1 前言
植物在生長過程中常會(huì)受到病原微生物的侵襲,為了抵御外來微生物的危害,植物在長期的進(jìn)化過程中,形成了一系列復(fù)雜的抗病防御機(jī)制,如:由于植物先天性結(jié)構(gòu)屏障和固有的毒性化合物的存在而表現(xiàn)的非寄主抗性,以及植物由于抗病基因(Resistance gene,R)的存在而表現(xiàn)出的局部或系統(tǒng)抗性[1]。因此, 克隆與分析植物抗病基因,對(duì)闡明植物抗病性的分子機(jī)制及改良作物抗病性具有重要的意義。
參考文獻(xiàn):
[1] 陳觀水, 周以飛, 林生, 等. 甘薯NBS類抗病基因類似物的分離與序列分析[J]. 熱帶亞熱帶植物學(xué)報(bào), 2006, 14(5): 359-365.
[2] Kanazin V, Marek L F, Shoemaker R C. Resistance gene analogs are conserved and clustered in soybean [J]. Proc Natl Acad Sci USA, 1996, 93(21): 11746-11750.
[3] Yu Y G, Buss G R, Saghai M M A. Isolation of a superfamily of candidate disease-resistance genes in soybean based on a conserved nucleotide-binding site[J]. Proc Natl Acad Sci USA, 1996, 93(21): 11751-11756.
[4] 付海天, 趙英, 蔣昌順. 柱花草炭疽病研究進(jìn)展[J]. 中國農(nóng)學(xué)通報(bào), 2006, 22(2): 382-385.
[5] 蔣昌順. 我國對(duì)柱花草屬不同種的研究與利用[J]. 熱帶農(nóng)業(yè)科學(xué), 1995(3): 64-70.
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